PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11029g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 268aa    MW: 30260.2 Da    PI: 7.2864
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11029g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.82.8e-52781821102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    q++ fw++q   ie+a df+nh+lPlarikki+k+dedv+misaeaPv+++kace+fi eltlr+w+h+een+rrtl+k+diaaa+++tdifdflv
  MA_11029g0010  78 QIEIFWANQmqgIEQAVDFRNHSLPLARIKKIMKSDEDVRMISAEAPVVFAKACEMFINELTLRAWIHTEENRRRTLQKNDIAAAIASTDIFDFLV 173
                    6789****988889********************************************************************************** PP

          NF-YC  94 divprdelk 102
                    divprdelk
  MA_11029g0010 174 DIVPRDELK 182
                    ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.64E-3161172IPR009072Histone-fold
PfamPF008086.3E-23100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.3E-38101178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDKQSTMQHM PIQYDVTPYQ TAQNLPPVVR GTFQQPPTSS YVQAAHAFSL SAHPNQLAYQ  60
HQLHQHQQQQ LLHHQKQQIE IFWANQMQGI EQAVDFRNHS LPLARIKKIM KSDEDVRMIS  120
AEAPVVFAKA CEMFINELTL RAWIHTEENR RRTLQKNDIA AAIASTDIFD FLVDIVPRDE  180
LKEEPVINLG TPTSSLSVAS SGSNAAGANS FPYYYLPNQH SGPHGVIVGK PMDSAIYMQQ  240
PRSPVAYMHN MLQRGHMHAD QSRSPNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-41951781497NF-YC
4awl_C2e-41951781194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-41951781194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0846470.0EF084647.1 Picea sitchensis clone WS02719_H11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.12e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.12e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.12e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.12e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.12e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG73e-66NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NTJ81e-122A9NTJ8_PICSI; Putative uncharacterized protein
STRINGPOPTR_0005s09770.18e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-64nuclear factor Y, subunit C2